N5 attribute paths

n5
attributes
metadata
tutorial
Learn to get and set arbitrary parts of an attribute hierarchy with the N5 API.
Apr 2, 2024
John Bogovic, Caleb Hulbert

N5 API Basics

hdf5
n5
zarr
imglib2
tutorial
Basics of the N5 API for Java developers. This tutorial shows how to read and write n-dimensional image data and structured metadata into HDF5, N5, and Zarr containers using the N5 API.
Feb 27, 2024
John Bogovic, Caleb Hulbert

The 2D image

Position and displacement field transformations

imglib2
transform
deformation
displacement
Create and apply non-linear transformations with Imglib2.
Feb 14, 2024
John Bogovic

Adding Stream support to ImgLib2

imglib2
stream-api
java
Examples and performance discussion of Java Streams in ImgLib2.
Oct 30, 2023
Tobias Pietzsch

How to work with the N5 API and ImgLib2?

imglib2
java
n5
hdf5
zarr
jupyter
notebook
Read and write ImgLib2 data with the N5 API.
Sep 27, 2022
Stephan Saalfeld

How to display ImgLib2 data in a notebook?

imglib2
jupyter
notebook
Render ImgLib2 data into notebook objects.
Sep 14, 2022
Stephan Saalfeld

Keymap settings in the preferences dialog

User-configurable Keymaps

ui-behaviour
bigdataviewer
How to set up user-configurable keyboard shortcuts using ui-behaviour and BigDataViewer’s Preferences Dialog
Aug 8, 2022
Tobias Pietzsch

 

Setup the IJava jupyter kernel

jupyter
ijava
jshell
java
kernel
Follow these instructions to setup the IJava jupyter kernel by Spencer Park.
Jun 5, 2022
Stephan Saalfeld

Juliaset Lambda

imglib2
lambda
fractal
juliaset
bigdataviewer
Interactively render the Juliaset as a lambda function in BigDataViewer.
May 2, 2022
Stephan Saalfeld
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