General BigDataViwer Resources
- GitHub Repository: https://github.com/bigdataviewer
- BigDataViewer ImageJ Documentation: https://imagej.net/plugins/bdv/
Video Lectures
- BigDataViewer Presentation by Tobias Pietzsch, a [NEUBIAS Academy @Home] Webinar
- Big Data I: Visualisation, File Formats and Processing in FIJI
- Marwan Zouinkhi How to Produce Videos with BigDataViewer
Tutorials and Notebooks
- BigDataViewer playground: https://github.com/bigdataviewer/bigdataviewer-playground
- Collection of various add-on and query actions for BDV
- BigDataViewer-vistools: https://github.com/bigdataviewer/bigdataviewer-vistools
- Deliver the
BdvFunctionsclass – API to make BDV a quick visualization tool in other projects
- Deliver the
- DAIS learnathon by Florian Jug: https://github.com/fjug/TutorialBigDataViewer
- Example of how to view user image data in a BDV stand-alone window as well as in BDV embedded into one’s own frame
- How to incrementally add images into one common view
- How to show additional custom overlay data (such as spheres) over the pixel data
- How to query and modify BDV state (such as view angle)
- DAIS learnathon by Tobias Pietzsch: Example how to draw in BDV into a virtual large image
References
- Publication : Pietzsch, T., Saalfeld, S., Preibisch, S., & Tomancak, P. (2015). BigDataViewer: Visualization and Processing for Large Image Data Sets. Nature Methods, 12(6), 481–483.,doi:10.1038/nmeth.3392
- See also ImgLib2 Resources